snakemake.script

Functions

get_language(source_file, source)
get_source(path, sourcecache[, basedir, ...])
script(path, basedir, input, output, params, ...)	Load a script from the given basedir + path and execute it.
strip_re(regex, s)	Strip a substring matching a regex from a string and return the stripped part and the remainder of the original string.

Classes

BashEncoder([namedlists, dicts, prefix])	bash docs for associative arrays - https://www.gnu.org/software/bash/manual/html_node/Arrays.html#Arrays
BashScript(path, cache_path, source, ...)
JuliaEncoder()	Encoding Python data structures into Julia.
JuliaScript(path, cache_path, source, ...)
PythonScript(path, cache_path, source, ...)
REncoder()	Encoding Python data structures into R.
RMarkdown(path, cache_path, source, basedir, ...)
RScript(path, cache_path, source, basedir, ...)
RustScript(path, cache_path, source, ...)
ScriptBase(path, cache_path, source, ...)
Snakemake(input_, output, params, wildcards, ...)