snakemake.io
Functions
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A flag for an input file that shall be considered ancient; i.e. its timestamp shall have no effect on which jobs to run. |
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A flag to specify that output is a directory, rather than a file or named pipe. |
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Expand wildcards in given filepatterns. |
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Glob the values of the wildcards by matching the given pattern to the filesystem. |
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Limit wildcards to the given values. |
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Mark a file as a local file. |
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Expand a given prefix with multiple extensions (e.g. .txt, .csv, _peaks.bed, ...). |
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A flag for a file that shall be write-protected after creation. |
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Flag benchmark records with the number of repeats. |
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Flag output file or directory as to be included into reports. |
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Return a string that does not contain any wildcard constraints. |
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A flag for an input or output file that shall be removed after usage. |
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An alias for temp. |
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Update wildcard constraints |
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Wait for given files to be present in the filesystem. |
Classes
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A list that additionally provides functions to name items. |
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