snakemake.io.PeriodicityDetector

class snakemake.io.PeriodicityDetector(min_repeat=20, max_repeat=100)[source]
__init__(min_repeat=20, max_repeat=100)[source]
Parameters:

  • max_repeat (int) – The maximum length of the periodic substring.

  • min_repeat (int) – The minimum length of the periodic substring.

Methods

__init__([min_repeat, max_repeat])

param max_repeat:

The maximum length of the periodic substring.

is_periodic(value)

Returns the periodic substring or None if not periodic.