snakemake.linting.snakefiles.SnakefileLinter
- class snakemake.linting.snakefiles.SnakefileLinter(workflow, items)[source]
-
Methods
__init__
(workflow, items)item_desc_json
(snakefile)item_desc_plain
(snakefile)lint
([json])lint_absolute_paths
(snakefile[, regex])lint_envvars
(snakefile[, regex])lint_mixed_func_and_rules
(snakefile[, ...])lint_path_add
(snakefile[, regex1, regex2])lint_singularity
(snakefile[, regex])lint_tab_usage
(snakefile[, regex])lints
()read_item
(snakefile)