snakemake.cwl

Functions

cwl(path, basedir, input, output, params, ...)

Load cwl from the given basedir + path and execute it.

dag_to_cwl(dag)

Convert a given DAG to a CWL workflow, which is returned as a JSON object.

job_to_cwl(job, dag, outputs, inputs)

Convert a job with its dependencies to a CWL workflow step.