snakemake.executors package

Submodules

snakemake.executors.dryrun module

class snakemake.executors.dryrun.Executor(workflow, logger)

Bases: AbstractExecutor

cancel()

property cores

get_exec_mode()

handle_job_error(job)

handle_job_success(job)

printcache(job)

printjob(job)

run_job(job)

Run a specific job or group job.

After successfull submission, you have to call self.report_job_submission(job).

shutdown()

snakemake.executors.local module

snakemake.executors.touch module

class snakemake.executors.touch.Executor(workflow, logger, post_init=True)

Bases: RealExecutor

cancel()

property cores

get_exec_mode()

get_python_executable()

handle_job_success(job)

run_job(job)

Run a specific job or group job.

After successfull submission, you have to call self.report_job_submission(job).

shutdown()

Module contents

snakemake.executors.change_working_directory(directory=None)

Change working directory in execution context if provided.