snakemake.script.Snakemake

class snakemake.script.Snakemake(input_, output, params, wildcards, threads, resources, log, config, rulename, bench_iteration, scriptdir=None)

__init__(input_, output, params, wildcards, threads, resources, log, config, rulename, bench_iteration, scriptdir=None)

Methods

__init__(input_, output, params, wildcards, ...)
log_fmt_shell([stdout, stderr, append])	Return a shell redirection string to be used in shell() calls