snakemake.script.BashScript

class snakemake.script.BashScript(path, cache_path, source, basedir, input_, output, params, wildcards, threads, resources, log, config, rulename, conda_env, conda_base_path, container_img, singularity_args, env_modules, bench_record, jobid, bench_iteration, cleanup_scripts, shadow_dir, is_local)

__init__(path, cache_path, source, basedir, input_, output, params, wildcards, threads, resources, log, config, rulename, conda_env, conda_base_path, container_img, singularity_args, env_modules, bench_record, jobid, bench_iteration, cleanup_scripts, shadow_dir, is_local)

Methods

__init__(path, cache_path, source, basedir, ...)
combine_preamble_and_source(preamble)
evaluate([edit])
execute_script(fname[, edit])
generate_preamble(path, source, basedir, ...)	rtype: str
get_preamble()
write_script(preamble, fd)

Attributes

editable
local_path