snakemake.scheduler.JobScheduler

class snakemake.scheduler.JobScheduler(workflow, executor_plugin)

__init__(workflow, executor_plugin)

Create a new instance of KnapsackJobScheduler.

Methods

__init__(workflow, executor_plugin)	Create a new instance of KnapsackJobScheduler.
calc_resource(name, value)
error_callback(job)
executor_error_callback(exception)
exit_gracefully(*args)
get_executor(job)
job_reward(job)
job_selector_greedy(jobs)	Using the greedy heuristic from "A Greedy Algorithm for the General Multidimensional Knapsack Problem", Akcay, Li, Xu, Annals of Operations Research, 2012
job_selector_ilp(jobs)	Job scheduling by optimization of resource usage by solving ILP using pulp
job_weight(job)
progress()	Display the progress.
required_by_job(temp_file, job)
rule_weight(rule)
run(jobs[, executor])
schedule()	Schedule jobs that are ready, maximizing cpu usage.
update_queue_input_jobs()

Attributes

open_jobs	Return open jobs.
remaining_jobs	Return jobs to be scheduled including not yet ready ones.
stats