snakemake.common

Functions

async_run(coroutine)	Attaches to running event loop or creates a new one to execute a coroutine. .. seealso:: https://github.com/snakemake/snakemake/issues/1105 https://stackoverflow.com/a/65696398.
bytesto(bytes, to[, bsize])	convert bytes to megabytes.
dict_to_key_value_args(some_dict[, ...])
expand_vars_and_user(value)
get_appdirs()
get_container_image()
get_file_hash(filename[, algorithm])	find the SHA256 hash string of a file.
get_function_params(func)
get_input_function_aux_params(func, ...)
get_last_stable_version()
get_snakemake_searchpaths()
get_uuid(name)
group_into_chunks(n, iterable)	Group iterable into chunks of size at most n.
is_local_file(path_or_uri)
is_namedtuple_instance(x)
log_location(msg)
mb_to_mib(mb)
num_if_possible(s)	Convert string to number if possible, otherwise return string.
parse_key_value_arg(arg, errmsg[, strip_quotes])
parse_uri(path_or_uri)
set_env(**environ)	Temporarily set the process environment variables.
smart_join(base, path[, abspath])
strip_prefix(text, prefix)
unique_justseen(iterable[, key])	List unique elements, preserving order.

Classes

Gather()	A namespace for gather to allow items to be accessed via dot notation.
Rules()	A namespace for rules so that they can be accessed via dot notation.
Scatter()	A namespace for scatter to allow items to be accessed via dot notation.

Modules

snakemake.common.argparse
snakemake.common.configfile
snakemake.common.git
snakemake.common.tbdstring
snakemake.common.workdir_handler